a.123.1.1


SCOP classification
 
Class: All alpha proteins
Fold: Nuclear receptor ligand-binding domain
Superfamily: Nuclear receptor ligand-binding domain
Family: Nuclear receptor ligand-binding domain



Family Members
 
Domain: d4itfa_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1s0xa_ of protein: Orphan nuclear receptor ROR-alpha from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2zkca1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1uhla_ of protein: Retinoid-X receptor beta (RXR-beta) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3tkma_ of protein: Peroxisome proliferator-activated receptor delta, PPAR-DELTA from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1xiub_ of protein: automated matches from Species: Biomphalaria glabrata [TaxId: 6526]
Domain: d1xnxb_ of protein: Orphan nuclear receptor NR1I3 (CAR) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3g0wa_ of protein: Androgen receptor from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d3k6pa_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3fc6d_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1m7wd_ of protein: Hepatocyte nuclear factor 4-alpha from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d2qpya_ of protein: Androgen receptor from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3eybd_ of protein: automated matches from Species: Branchiostoma floridae [TaxId: 7739]
Domain: d1nq7a_ of protein: Orphan nuclear receptor ROR-beta from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d4is8b_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4bcrb_ of protein: Peroxisome proliferator activated receptor alpha, PPAR-alpha from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1xdkf_ of protein: Retinoic acid receptor beta (RAR-beta) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2nxxh_ of protein: automated matches from Species: Tribolium castaneum [TaxId: 7070]
Domain: d1ot7b_ of protein: Bile acid receptor FXR from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d4lbda_ of protein: Retinoic acid receptor gamma (RAR-gamma) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4lnxa_ of protein: Thyroid hormone receptor alpha1 (TR-alpha1) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2gl8d_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3uvva_ of protein: automated matches from Species: Chicken (Gallus gallus) [TaxId: 9031]
Domain: d1pdub_ of protein: Nuclear hormone receptor HR38 from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1t7ta_ of protein: Androgen receptor from Species: Chimpanzee (Pan troglodytes) [TaxId: 9598]
Domain: d3a9ea_ of protein: Retinoid-X receptor alpha (RXR-alpha) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1ovlf_ of protein: Orphan nuclear receptor NURR1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1s9qb_ of protein: Orphan nuclear receptor ERR3 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1yjea_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d1lv2a_ of protein: Hepatocyte nuclear factor 4-gamma from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1xvpd_ of protein: Orphan nuclear receptor NR1I3 (CAR) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4prgd_ of protein: Peroxisome proliferator activated receptor gamma, PPAR-gamma from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3jzca_ of protein: Thyroid hormone receptor beta (TR-beta) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2j7ya_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d2nxxd_ of protein: automated matches from Species: Tribolium castaneum [TaxId: 7070]
Domain: d3ixpd_ of protein: automated matches from Species: Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)