a.21.1.1


SCOP classification
 
Class: All alpha proteins
Fold: HMG-box
Superfamily: HMG-box
Family: HMG-box



Family Members
 
Domain: d2gzka1 of protein: High mobility group protein 1, HMG1 from Species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Domain: d1gt0d_ of protein: Sox-2 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3f27d_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1nhna_ of protein: High mobility group protein 1, HMG1 from Species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Domain: d3u2bc_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1wgfa_ of protein: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2le4a_ of protein: Sox-2 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1i11a_ of protein: Sox-5 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2gzka2 of protein: SRY from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3nm9p_ of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1lwma_ of protein: NHP6a from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d2yqia_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1j3xa_ of protein: High mobility group protein 2, HMG2 from Species: Pig (Sus scrofa) [TaxId: 9823]
Domain: d2hdza_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wxla_ of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)