a.22.1.3


SCOP classification
 
Class: All alpha proteins
Fold: Histone-fold
Superfamily: Histone-fold
Family: TBP-associated factors, TAFs



Family Members
 
Domain: d1tafa_ of protein: TAF(II)42 from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1jfia_ of protein: Negative cofactor 2, NC2, alpha chain from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1h3od_ of protein: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2bymc_ of protein: Chrac-16 from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d2bymd_ of protein: Chrac-14 from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1bh9b_ of protein: TAF(II)28 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1tafb_ of protein: TAF(II)62 from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1jfib_ of protein: Negative cofactor 2, NC2, beta chain from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4g92b_ of protein: automated matches from Species: Aspergillus nidulans [TaxId: 227321]
Domain: d1bh9a_ of protein: TAF(II)18 from Species: Human (Homo sapiens) [TaxId: 9606]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)