a.4.1.0


SCOP classification
 
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: automated matches



Family Members
 
Domain: d2kdza2 of protein: automated matches from Species: Trichomonas vaginalis [TaxId: 5722]
Domain: d2kdza1 of protein: automated matches from Species: Trichomonas vaginalis [TaxId: 5722]
Domain: d2h1kb_ of protein: automated matches from Species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Domain: d2ld5a_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2vi6h_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2yuma_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4ac0a1 of protein: automated matches from Species: Escherichia coli [TaxId: 562]
Domain: d2djna_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2dmta_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2l7za_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2me6a_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2dmqa_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3a03a_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2m0ca_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2nogb2 of protein: automated matches from Species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Domain: d2dmsa_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3osgd2 of protein: automated matches from Species: Trichomonas vaginalis [TaxId: 5722]
Domain: d3osgd1 of protein: automated matches from Species: Trichomonas vaginalis [TaxId: 5722]
Domain: d2d9aa_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2elka_ of protein: automated matches from Species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Domain: d2da3a_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2dmua_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3zoba_ of protein: automated matches from Species: Chicken (Gallus gallus) [TaxId: 9031]
Domain: d2d5vb2 of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d2vpra1 of protein: automated matches from Species: Pasteurella multocida [TaxId: 747]
Domain: d2xsdc2 of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)