a.4.1.1


SCOP classification
 
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain



Family Members
 
Domain: d2r5za_ of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d2lmda_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2lkxa1 of protein: Pituitary homeobox 2 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1vnda_ of protein: VND/NK-2 protein from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1zq3p1 of protein: Homeotic bicoid protein from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1x2na1 of protein: Homeobox protein pknox1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2e1oa1 of protein: Homeobox protein prh from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1x58a1 of protein: Hypothetical protein 4930532d21rik from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3cmya_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2r5zb_ of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1yrna_ of protein: Mating type protein A1 Homeodomain from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d1ig7a_ of protein: Msx-1 homeodomain from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d4j19b_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d9antb_ of protein: Antennapedia Homeodomain from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1s7ea1 of protein: Hepatocyte nuclear factor 6 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1b8ia_ of protein: Ultrabithorax (ubx) homeodomain from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d2hoaa_ of protein: Antennapedia Homeodomain from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1pufb_ of protein: pbx1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1b72a_ of protein: Homeobox protein hox-b1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3lnqa_ of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1lfup_ of protein: pbx1 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1wh5a_ of protein: ZF-HD homeobox protein At5g65410 from Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Domain: d3a01e_ of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d2lfba_ of protein: Hepatocyte nuclear factor 1a (LFB1/HNF1) from Species: Rat (Rattus rattus) [TaxId: 10117]
Domain: d2cqxa1 of protein: LAG1 longevity assurance homolog 5, LASS5 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1yrnb_ of protein: mat alpha2 Homeodomain from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d3k2ab_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1pufa_ of protein: Homeobox protein hox-a9 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1xpxa_ of protein: Homeo-prospero domain of Prospero protein from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d3rkqb_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3hddb_ of protein: Engrailed Homeodomain from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d1x41a1 of protein: Transcriptional adaptor 2-like, TADA2L, isoform b from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wh7a_ of protein: ZF-HD homeobox protein At4g24660 from Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Domain: d1ftta_ of protein: Thyroid transcription factor 1 homeodomain from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d1x2ma1 of protein: Lag1 longevity assurance homolog 6, LASS6 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2lp0a_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1hdpa_ of protein: Oct-2 POU Homeodomain from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1jggb_ of protein: Even-skipped homeodomain from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d2hi3a_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1bw5a_ of protein: Insulin gene enhancer protein isl-1 from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d2craa1 of protein: Homeobox protein hox-b13 from Species: Human (Homo sapiens) [TaxId: 9606]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)