a.4.1.9


SCOP classification
 
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Tetracyclin repressor-like, N-terminal domain



Family Members
 
Domain: d2gena1 of protein: Probable transcriptional regulator PA1836 from Species: Pseudomonas aeruginosa [TaxId: 287]
Domain: d2g7sa1 of protein: Putative transcriptional regulator Atu0279 from Species: Agrobacterium tumefaciens [TaxId: 358]
Domain: d2gfnb1 of protein: Probable transcriptional regulator RHA1_ro04631 from Species: Rhodococcus sp. RHA1 [TaxId: 101510]
Domain: d2g7la1 of protein: Putative transcriptional regulator SCO7704 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d2fd5a1 of protein: Probable transcriptional regulator PA3133 from Species: Pseudomonas aeruginosa [TaxId: 287]
Domain: d2i10b1 of protein: Putative transcriptional regulator RHA1_ro09068 from Species: Rhodococcus sp. [TaxId: 1831]
Domain: d2oi8a1 of protein: Putative regulatory protein Sco4313 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d2fq4a1 of protein: Transcriptional regulator BC3163 from Species: Bacillus cereus [TaxId: 1396]
Domain: d2iu5b1 of protein: Transcriptional activator DhaS from Species: Lactococcus lactis [TaxId: 1358]
Domain: d2g7ga1 of protein: Putative transcriptional regulator Rha04620 from Species: Rhodococcus sp. RHA1 [TaxId: 101510]
Domain: d1sgmb1 of protein: Putative transcriptional regulator YxaF from Species: Bacillus subtilis [TaxId: 1423]
Domain: d2d6yb1 of protein: Putative regulator SCO4008 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d2g3bb1 of protein: Putative transcriptional regulator from Species: Rhodococcus sp. RHA1 [TaxId: 101510]
Domain: d1t33b1 of protein: Putative transcriptional repressor YbiH from Species: Salmonella typhimurium [TaxId: 90371]
Domain: d2hkub1 of protein: Putative transcriptional regulator RHA1_ro03468 from Species: Rhodococcus sp. RHA1 [TaxId: 101510]
Domain: d4jykb1 of protein: Hypothetical transcriptional regulator YcdC from Species: Escherichia coli [TaxId: 562]
Domain: d1zk8b1 of protein: Transcriptional regulator BC5000 from Species: Bacillus cereus [TaxId: 1396]
Domain: d3pm1b1 of protein: Multidrug binding protein QacR from Species: Staphylococcus aureus [TaxId: 1280]
Domain: d1rktb1 of protein: Hypothetical transcriptional regulator YfiR from Species: Bacillus subtilis [TaxId: 1423]
Domain: d1z0xb1 of protein: Transcriptional regulator EF0787 from Species: Enterococcus faecalis [TaxId: 1351]
Domain: d3c07b1 of protein: Putative transcriptional regulator SCO4850 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d2np5d1 of protein: Transcriptional regulator RHA1_ro04179 from Species: Rhodococcus sp. [TaxId: 1831]
Domain: d2g0ee1 of protein: Multidrug binding protein QacR from Species: Staphylococcus aureus [TaxId: 1280]
Domain: d2o7ta1 of protein: Transcriptional regulator Cgl1640/Cg1846 from Species: Corynebacterium glutamicum [TaxId: 1718]
Domain: d2id3b1 of protein: Putative transcriptional regulator SCO5951 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d2np3b1 of protein: Putative transcriptional regulator SCO0857 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d2hq5e1 of protein: Multidrug binding protein QacR from Species: Staphylococcus aureus [TaxId: 1280]
Domain: d2zozb1 of protein: Transcriptional regulator Cgl2612 from Species: Corynebacterium glutamicum [TaxId: 1718]
Domain: d2fbqa1 of protein: Transcriptional regulator PsrA from Species: Pseudomonas aeruginosa [TaxId: 287]
Domain: d2hyja1 of protein: Putative transcriptional regulator SCO4940 from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d4i76b1 of protein: Transcriptional regulator TM1030 from Species: Thermotoga maritima [TaxId: 2336]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)