a.4.5.0


SCOP classification
 
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: automated matches



Family Members
 
Domain: d4etsb_ of protein: automated matches from Species: Campylobacter jejuni [TaxId: 32022]
Domain: d2jscb_ of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 83332]
Domain: d2m5wa_ of protein: automated matches from Species: Slime mold (Dictyostelium discoideum) [TaxId: 44689]
Domain: d4gcvl_ of protein: automated matches from Species: Pseudomonas aeruginosa [TaxId: 208964]
Domain: d2fa5b_ of protein: automated matches from Species: Xanthomonas campestris [TaxId: 339]
Domain: d4hw0c_ of protein: automated matches from Species: Sulfolobus solfataricus [TaxId: 273057]
Domain: d3bpxb_ of protein: automated matches from Species: Methanobacterium thermoautotrophicum
Domain: d3f8fb_ of protein: automated matches from Species: Lactococcus lactis [TaxId: 416870]
Domain: d4hqmb_ of protein: automated matches from Species: Staphylococcus aureus [TaxId: 1280]
Domain: d3k2zb1 of protein: automated matches from Species: Thermotoga maritima [TaxId: 2336]
Domain: d3glxa1 of protein: automated matches from Species: Corynebacterium diphtheriae [TaxId: 1717]
Domain: d2lkpb_ of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 1773]
Domain: d4esba_ of protein: automated matches from Species: Bacillus cereus [TaxId: 226900]
Domain: d4i7hb_ of protein: automated matches from Species: Streptococcus pyogenes [TaxId: 198466]
Domain: d2o03a_ of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 1773]
Domain: d3p9kd1 of protein: automated matches from Species: Lolium perenne [TaxId: 4522]
Domain: d2qyob1 of protein: automated matches from Species: Medicago truncatula [TaxId: 3880]
Domain: d2xigd_ of protein: automated matches from Species: Helicobacter pylori [TaxId: 85962]
Domain: d3ecob_ of protein: automated matches from Species: Staphylococcus aureus [TaxId: 158878]
Domain: d2hztd_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 1423]
Domain: d4hbld_ of protein: automated matches from Species: Staphylococcus epidermidis [TaxId: 176279]
Domain: d3df8a_ of protein: automated matches from Species: Thermoplasma volcanium [TaxId: 50339]
Domain: d3mwmb_ of protein: automated matches from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d3hhhb_ of protein: automated matches from Species: Enterococcus faecalis [TaxId: 1351]
Domain: d3eyyb_ of protein: automated matches from Species: Streptomyces coelicolor [TaxId: 1902]
Domain: d3gw2a_ of protein: automated matches from Species: Mycobacterium bovis [TaxId: 233413]
Domain: d4lmyb_ of protein: automated matches from Species: Streptococcus pyogenes [TaxId: 198466]
Domain: d3cuqa1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3cuqa2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3iwzd2 of protein: automated matches from Species: Xanthomonas campestris [TaxId: 340]
Domain: d2as5g_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3bjaa_ of protein: automated matches from Species: Bacillus cereus [TaxId: 222523]
Domain: d3k69a_ of protein: automated matches from Species: Lactobacillus plantarum [TaxId: 1590]
Domain: d1ylfc_ of protein: automated matches from Species: Bacillus cereus [TaxId: 226900]
Domain: d4a5nd_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 1423]
Domain: d3tkyd1 of protein: automated matches from Species: Clarkia breweri [TaxId: 36903]
Domain: d4ejob_ of protein: automated matches from Species: Eggerthella lenta [TaxId: 479437]
Domain: d4esfa_ of protein: automated matches from Species: Bacillus cereus [TaxId: 222523]
Domain: d3mzhb2 of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 83332]
Domain: d2w57b_ of protein: automated matches from Species: Vibrio cholerae [TaxId: 666]
Domain: d3cjna_ of protein: automated matches from Species: Silicibacter pomeroyi [TaxId: 246200]
Domain: d3e6mh_ of protein: automated matches from Species: Silicibacter pomeroyi [TaxId: 246200]
Domain: d2mbfa_ of protein: automated matches from Species: Nematode (Brugia malayi) [TaxId: 6279]
Domain: d2wc2b2 of protein: automated matches from Species: Escherichia coli [TaxId: 469008]
Domain: d1zhfa1 of protein: automated matches from Species: Medicago truncatula [TaxId: 3880]
Domain: d3qu3c_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3l7wa_ of protein: automated matches from Species: Streptococcus mutans [TaxId: 210007]
Domain: d2dlla_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3i59b2 of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 1773]
Domain: d3elkb_ of protein: automated matches from Species: Thermoplasma acidophilum [TaxId: 2303]
Domain: d4a2uh2 of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 1773]
Domain: d4evib1 of protein: automated matches from Species: Linum nodiflorum [TaxId: 407264]
Domain: d3jw4c_ of protein: automated matches from Species: Clostridium acetobutylicum [TaxId: 1488]
Domain: d2p6th1 of protein: automated matches from Species: Neisseria meningitidis [TaxId: 122586]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)