b.38.1.1


SCOP classification
 
Class: All beta proteins
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP



Family Members
 
Domain: d1i5ln_ of protein: Archaeal homoheptameric Sm protein from Species: Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
Domain: d1th7n_ of protein: Archaeal homoheptameric Sm protein from Species: Sulfolobus solfataricus [TaxId: 2287]
Domain: d1m5qz_ of protein: Sm-Like archaeal protein Smap3 from Species: Pyrobaculum aerophilum [TaxId: 13773]
Domain: d4f7uc_ of protein: D1 core SNRNP protein from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3pggb_ of protein: U6 snRNA-associated sm-like protein LSM5 from Species: Cryptosporidium parvum [TaxId: 5807]
Domain: d1ljoa_ of protein: Archaeal homoheptameric Sm protein from Species: Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]
Domain: d1lnxg_ of protein: Archaeal homoheptameric Sm protein from Species: Pyrobaculum aerophilum [TaxId: 13773]
Domain: d4f7ud_ of protein: D2 core SNRNP protein from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1m8vn_ of protein: Archaeal homoheptameric Sm protein from Species: Pyrococcus abyssi [TaxId: 29292]
Domain: d1mgqg_ of protein: Archaeal homoheptameric Sm protein from Species: Methanobacterium thermoautotrophicum [TaxId: 145262]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)