b.40.4.5


SCOP classification
 
Class: All beta proteins
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like



Family Members
 
Domain: d1t9ha1 of protein: Probable GTPase EngC (YjeQ), N-terminal domain from Species: Bacillus subtilis [TaxId: 1423]
Domain: d2haxb_ of protein: Major cold shock protein from Species: Bacillus caldolyticus [TaxId: 1394]
Domain: d1ripa_ of protein: Ribosomal protein S17 from Species: Bacillus stearothermophilus [TaxId: 1422]
Domain: d1x6oa2 of protein: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) from Species: Leishmania infantum [TaxId: 5671]
Domain: d1wi5a_ of protein: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3i2zb_ of protein: automated matches from Species: Salmonella typhimurium [TaxId: 90371]
Domain: d1go3m1 of protein: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) from Species: Methanococcus jannaschii [TaxId: 2190]
Domain: d3camb_ of protein: automated matches from Species: Neisseria meningitidis [TaxId: 122586]
Domain: d1jt8a_ of protein: Archaeal initiation factor-1a, aIF1a from Species: Methanococcus jannaschii [TaxId: 2190]
Domain: d3i4ob_ of protein: automated matches from Species: Mycobacterium tuberculosis [TaxId: 83332]
Domain: d1k0rb1 of protein: S1 domain of NusA from Species: Mycobacterium tuberculosis [TaxId: 1773]
Domain: d2ba0c1 of protein: S1-domain of exosome complex RNA-binding protein 1, ECR1 from Species: Archaeoglobus fulgidus [TaxId: 2234]
Domain: d1g6pa_ of protein: Major cold shock protein from Species: Thermotoga maritima [TaxId: 2336]
Domain: d4ba2i2 of protein: S1-domain of exosome complex RNA-binding protein 1, ECR1 from Species: Sulfolobus solfataricus [TaxId: 2287]
Domain: d1bkba2 of protein: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) from Species: Pyrobaculum aerophilum [TaxId: 13773]
Domain: d2atwc1 of protein: S1 domain of NusA from Species: Mycobacterium tuberculosis [TaxId: 1773]
Domain: d1h95a_ of protein: Y-box protein 1 cold shock domain (YB1-CSD) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1iz6c2 of protein: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) from Species: Pyrococcus horikoshii [TaxId: 53953]
Domain: d1l2fa1 of protein: S1 domain of NusA from Species: Thermotoga maritima [TaxId: 2336]
Domain: d3bzka4 of protein: Tex S1-domain from Species: Pseudomonas aeruginosa [TaxId: 287]
Domain: d1q8ka4 of protein: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3mefa_ of protein: Major cold shock protein from Species: Escherichia coli [TaxId: 562]
Domain: d3a0jb_ of protein: automated matches from Species: Thermus thermophilus HB8 [TaxId: 300852]
Domain: d1jjga_ of protein: Viral structural mimic of eIF2alpha from Species: Myxoma virus, m156r [TaxId: 10273]
Domain: d1luzb_ of protein: Viral structural mimic of eIF2alpha from Species: Vaccinia virus [TaxId: 10245]
Domain: d1khia2 of protein: C-terminal domain of eIF5a homologue (Hex1) from Species: Fungus (Neurospora crassa) [TaxId: 5141]
Domain: d1e3pa2 of protein: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase from Species: Streptomyces antibioticus [TaxId: 1890]
Domain: d2r7fa1 of protein: Ribonuclease II family protein DR0020 from Species: Deinococcus radiodurans [TaxId: 1299]
Domain: d2l15a_ of protein: Major cold shock protein from Species: Escherichia coli [TaxId: 562]
Domain: d1ne3a_ of protein: Ribosomal protein S28e from Species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Domain: d2eifa2 of protein: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) from Species: Methanococcus jannaschii [TaxId: 2190]
Domain: d1ny4a_ of protein: Ribosomal protein S28e from Species: Pyrococcus horikoshii [TaxId: 53953]
Domain: d3pf5b_ of protein: Major cold shock protein from Species: Bacillus subtilis [TaxId: 1423]
Domain: d1u0lc1 of protein: Probable GTPase EngC (YjeQ), N-terminal domain from Species: Thermotoga maritima [TaxId: 2336]
Domain: d1xtda2 of protein: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) from Species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Domain: d2c35h1 of protein: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) from Species: Human (Homo sapiens) [TaxId: 9606]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)