b.50.1.1


SCOP classification
 
Class: All beta proteins
Fold: Acid proteases
Superfamily: Acid proteases
Family: Retroviral protease (retropepsin)



Family Members
 
Domain: d3ixob_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d2pc0a_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2psvb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d1fmba_ of protein: EIAV protease from Species: Equine infectious anemia virus [TaxId: 11665]
Domain: d2o4sa_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2f3kb_ of protein: automated matches from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d2p3bb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2q55b_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2p3cb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2fmba_ of protein: EIAV protease from Species: Equine infectious anemia virus [TaxId: 11665]
Domain: d2o4ka_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4k4rb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4a6cb_ of protein: automated matches from Species: Human immunodeficiency virus [TaxId: 12721]
Domain: d7upjb_ of protein: Human immunodeficiency virus type 2 (HIV-2) protease from Species: Human immunodeficiency virus type 2 [TaxId: 11709]
Domain: d1ytja_ of protein: Simian immunodeficiency virus (SIV) protease from Species: Simian immunodeficiency virus, different strains [TaxId: 11723]
Domain: d3lzub_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2i4wb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2o4la_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2cenb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d9hvpb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4a4qb_ of protein: automated matches from Species: Human immunodeficiency virus [TaxId: 12721]
Domain: d1c70b_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d3d3tb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d8hvpb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2psub_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4fiva_ of protein: Feline immunodeficiency virus (FIV) protease from Species: Feline immunodeficiency virus [TaxId: 11673]
Domain: d2pk6b_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4djrb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d3s45b_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus 2 [TaxId: 11709]
Domain: d3mwsb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d1tw7b_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d3sacb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d2i0db_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4gzfb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d2r8na_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d6fiva_ of protein: Feline immunodeficiency virus (FIV) protease from Species: Feline immunodeficiency virus [TaxId: 11673]
Domain: d2fddb_ of protein: automated matches from Species: Human immunodeficiency virus 1 [TaxId: 11676]
Domain: d1sipa_ of protein: Simian immunodeficiency virus (SIV) protease from Species: Simian immunodeficiency virus, different strains [TaxId: 11723]
Domain: d1hvca2 of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d1hvca1 of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d3u71a_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d6upjb_ of protein: Human immunodeficiency virus type 2 (HIV-2) protease from Species: Human immunodeficiency virus type 2 [TaxId: 11709]
Domain: d2q5kb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d4kb9b_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]
Domain: d1mvpb_ of protein: Myeloblastosis-associated viral protease from Species: Avian myeloblastosis associated virus [TaxId: 11960]
Domain: d1c6zb_ of protein: Human immunodeficiency virus type 1 protease from Species: Human immunodeficiency virus type 1 [TaxId: 11676]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)