c.1.8.1


SCOP classification
 
Class: Alpha and beta proteins (a/b)
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain



Family Members
 
Domain: d1mxga2 of protein: Bacterial alpha-amylase from Species: Pyrococcus woesei [TaxId: 2262]
Domain: d2by3a3 of protein: Glycosyltrehalose trehalohydrolase, central domain from Species: Deinococcus radiodurans [TaxId: 1299]
Domain: d1m53a2 of protein: Isomaltulose synthase PalI from Species: Klebsiella sp., lx3 [TaxId: 576]
Domain: d2fh8a3 of protein: Pullulanase PulA from Species: Klebsiella pneumoniae [TaxId: 573]
Domain: d3vm5a1 of protein: automated matches from Species: Oryzias latipes [TaxId: 8090]
Domain: d1wzaa2 of protein: Bacterial alpha-amylase from Species: Halothermothrix orenii [TaxId: 31909]
Domain: d1uasa2 of protein: Melibiase from Species: Rice (Oryza sativa) [TaxId: 4530]
Domain: d1iv8a2 of protein: Maltooligosyl trehalose synthase from Species: Sulfolobus acidocaldarius [TaxId: 2285]
Domain: d1ktca2 of protein: Melibiase from Species: Chicken (Gallus gallus) [TaxId: 9031]
Domain: d1viwa2 of protein: Animal alpha-amylase from Species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Domain: d1cyga4 of protein: Cyclodextrin glycosyltransferase from Species: Bacillus stearothermophilus [TaxId: 1422]
Domain: d3dhpa2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wdsa1 of protein: beta-Amylase from Species: Soybean (Glycine max) [TaxId: 3847]
Domain: d2aaaa2 of protein: Fungal alpha-amylases from Species: Aspergillus niger, acid amylase [TaxId: 5061]
Domain: d2gjra2 of protein: automated matches from Species: Bacillus halmapalus [TaxId: 79882]
Domain: d1m7xd3 of protein: 1,4-alpha-glucan branching enzyme, central domain from Species: Escherichia coli [TaxId: 562]
Domain: d1l0pa2 of protein: Bacterial alpha-amylase from Species: Pseudoalteromonas haloplanktis [TaxId: 228]
Domain: d7taaa2 of protein: Fungal alpha-amylases from Species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Domain: d1uoka2 of protein: Oligo-1,6, glucosidase from Species: Bacillus cereus [TaxId: 1396]
Domain: d1ua7a2 of protein: Bacterial alpha-amylase from Species: Bacillus subtilis [TaxId: 1423]
Domain: d1kwka2 of protein: A4 beta-galactosidase from Species: Thermus thermophilus [TaxId: 274]
Domain: d1ud8a2 of protein: Bacterial alpha-amylase from Species: Bacillus sp., ksm-k38 [TaxId: 1409]
Domain: d1bg9a2 of protein: Plant alpha-amylase from Species: Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
Domain: d9cgta4 of protein: Cyclodextrin glycosyltransferase from Species: Bacillus circulans, different strains [TaxId: 1397]
Domain: d1x1na1 of protein: Amylomaltase MalQ from Species: Potato (Solanum tuberosum) [TaxId: 4113]
Domain: d1gjwa2 of protein: Maltosyltransferase from Species: Thermotoga maritima [TaxId: 2336]
Domain: d1tz7b_ of protein: Amylomaltase MalQ from Species: Aquifex aeolicus [TaxId: 63363]
Domain: d1vjsa2 of protein: Bacterial alpha-amylase from Species: Bacillus licheniformis [TaxId: 1402]
Domain: d3dc0a1 of protein: automated matches from Species: Bacillus sp. [TaxId: 535911]
Domain: d2gdvb2 of protein: Sucrose phosphorylase from Species: Bifidobacterium adolescentis [TaxId: 1680]
Domain: d2fhfa5 of protein: Pullulanase PulA from Species: Klebsiella pneumoniae [TaxId: 573]
Domain: d3a6ob3 of protein: Maltogenic amylase, central domain from Species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Domain: d1t0oa2 of protein: Melibiase from Species: Trichoderma reesei [TaxId: 51453]
Domain: d4gqra1 of protein: Animal alpha-amylase from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2x1ia_ of protein: automated matches from Species: Thermus brockianus [TaxId: 56956]
Domain: d2diea1 of protein: automated matches from Species: Bacillus sp.
Domain: d1hvxa2 of protein: Bacterial alpha-amylase from Species: Bacillus stearothermophilus [TaxId: 1422]
Domain: d2amga2 of protein: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) from Species: Pseudomonas stutzeri [TaxId: 316]
Domain: d3vgha2 of protein: Glycosyltrehalose trehalohydrolase, central domain from Species: Sulfolobus solfataricus, km1 [TaxId: 2287]
Domain: d3gbea1 of protein: automated matches from Species: Protaminobacter rubrum [TaxId: 126825]
Domain: d1qhpa4 of protein: Cyclodextrin glycosyltransferase from Species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Domain: d1lwjb2 of protein: 4-alpha-glucanotransferase from Species: Thermotoga maritima [TaxId: 2336]
Domain: d5bcad2 of protein: Bacterial beta-amylase from Species: Bacillus cereus [TaxId: 1396]
Domain: d1bf2a3 of protein: Isoamylase, central domain from Species: Pseudomonas amyloderamosa [TaxId: 32043]
Domain: d2owxa_ of protein: automated matches from Species: Thermus thermophilus [TaxId: 274]
Domain: d1fa2a_ of protein: beta-Amylase from Species: Sweet potato (Ipomoea batatas) [TaxId: 4120]
Domain: d1smab3 of protein: Maltogenic amylase, central domain from Species: Thermus sp. [TaxId: 275]
Domain: d2xgia_ of protein: automated matches from Species: Barley (Hordeum vulgare) [TaxId: 4513]
Domain: d3edkb2 of protein: automated matches from Species: Flavobacterium sp. [TaxId: 197856]
Domain: d4do6b1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3l2ma1 of protein: automated matches from Species: Pig (Sus scrofa) [TaxId: 9823]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)