c.55.1.0


SCOP classification
 
Class: Alpha and beta proteins (a/b)
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: automated matches



Family Members
 
Domain: d3r9pb2 of protein: automated matches from Species: Mycobacterium avium [TaxId: 1770]
Domain: d4ijnb1 of protein: automated matches from Species: Mycobacterium smegmatis [TaxId: 246196]
Domain: d4ijnb2 of protein: automated matches from Species: Mycobacterium smegmatis [TaxId: 246196]
Domain: d3hm8d1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3zeud2 of protein: automated matches from Species: Salmonella enterica [TaxId: 909946]
Domain: d4db3a1 of protein: automated matches from Species: Vibrio vulnificus [TaxId: 672]
Domain: d4db3a2 of protein: automated matches from Species: Vibrio vulnificus [TaxId: 672]
Domain: d4htla2 of protein: automated matches from Species: Listeria monocytogenes [TaxId: 169963]
Domain: d3qmlb1 of protein: automated matches from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d4m63e1 of protein: automated matches from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d3l6qb1 of protein: automated matches from Species: Cryptosporidium parvum [TaxId: 353152]
Domain: d2w41b2 of protein: automated matches from Species: Plasmodium falciparum [TaxId: 36329]
Domain: d4dq8b2 of protein: automated matches from Species: Mycobacterium marinum [TaxId: 216594]
Domain: d4dq8b1 of protein: automated matches from Species: Mycobacterium marinum [TaxId: 216594]
Domain: d4jaxf2 of protein: automated matches from Species: Kluyveromyces lactis [TaxId: 284590]
Domain: d4iz9a2 of protein: automated matches from Species: Mycobacterium avium [TaxId: 243243]
Domain: d3hm8d2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3djcl2 of protein: automated matches from Species: Legionella pneumophila [TaxId: 272624]
Domain: d2nztb3 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2nztb2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4gnib1 of protein: automated matches from Species: Chaetomium thermophilum [TaxId: 759272]
Domain: d4gnib2 of protein: automated matches from Species: Chaetomium thermophilum [TaxId: 759272]
Domain: d3ge1d2 of protein: automated matches from Species: Staphylococcus aureus [TaxId: 93062]
Domain: d3ge1d1 of protein: automated matches from Species: Staphylococcus aureus [TaxId: 93062]
Domain: d3zeud1 of protein: automated matches from Species: Salmonella enterica [TaxId: 909946]
Domain: d3gl1b2 of protein: automated matches from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d3gl1b1 of protein: automated matches from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d3gdqa2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3gdqa1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3qmlb2 of protein: automated matches from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d4efha1 of protein: automated matches from Species: Acanthamoeba castellanii [TaxId: 5755]
Domain: d3khyb2 of protein: automated matches from Species: Francisella tularensis [TaxId: 119856]
Domain: d3khyb1 of protein: automated matches from Species: Francisella tularensis [TaxId: 119856]
Domain: d4iz9a1 of protein: automated matches from Species: Mycobacterium avium [TaxId: 243243]
Domain: d2gemb2 of protein: automated matches from Species: Salmonella typhimurium [TaxId: 602]
Domain: d3cipa1 of protein: automated matches from Species: Dictyostelium discoideum
Domain: d3fe1c2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3fe1c1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2h3gx2 of protein: automated matches from Species: Bacillus anthracis [TaxId: 198094]
Domain: d2h3gx1 of protein: automated matches from Species: Bacillus anthracis [TaxId: 198094]
Domain: d4jaxf1 of protein: automated matches from Species: Kluyveromyces lactis [TaxId: 284590]
Domain: d3djcl1 of protein: automated matches from Species: Legionella pneumophila [TaxId: 272624]
Domain: d3slcd2 of protein: automated matches from Species: Salmonella enterica [TaxId: 90371]
Domain: d3slcd1 of protein: automated matches from Species: Salmonella enterica [TaxId: 90371]
Domain: d4e1jd2 of protein: automated matches from Species: Sinorhizobium meliloti [TaxId: 266834]
Domain: d4e1jd1 of protein: automated matches from Species: Sinorhizobium meliloti [TaxId: 266834]
Domain: d2w41b1 of protein: automated matches from Species: Plasmodium falciparum [TaxId: 36329]
Domain: d2zf5y2 of protein: automated matches from Species: Thermococcus kodakarensis [TaxId: 69014]
Domain: d2zf5y1 of protein: automated matches from Species: Thermococcus kodakarensis [TaxId: 69014]
Domain: d4h0ob2 of protein: automated matches from Species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]
Domain: d4h0ob1 of protein: automated matches from Species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]
Domain: d4br5a1 of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d4htla1 of protein: automated matches from Species: Listeria monocytogenes [TaxId: 169963]
Domain: d3l6qb2 of protein: automated matches from Species: Cryptosporidium parvum [TaxId: 353152]
Domain: d3w3da1 of protein: automated matches from Species: Chicken (Gallus gallus) [TaxId: 9031]
Domain: d2nztb4 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2nztb1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3w0lc1 of protein: automated matches from Species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Domain: d3w0lc2 of protein: automated matches from Species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Domain: d3ldpb1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3ldpb2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3b8ax1 of protein: automated matches from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d3b8ax2 of protein: automated matches from Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Domain: d3r9pb1 of protein: automated matches from Species: Mycobacterium avium [TaxId: 1770]
Domain: d4cd3a1 of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d4h0pb1 of protein: automated matches from Species: Cryptococcus neoformans [TaxId: 5207]
Domain: d4h0pb2 of protein: automated matches from Species: Cryptococcus neoformans [TaxId: 5207]
Domain: d2gemb1 of protein: automated matches from Species: Salmonella typhimurium [TaxId: 602]
Domain: d2bh1b1 of protein: automated matches from Species: Vibrio cholerae [TaxId: 666]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)