c.93.1.0


SCOP classification
 
Class: Alpha and beta proteins (a/b)
Fold: Periplasmic binding protein-like I
Superfamily: Periplasmic binding protein-like I
Family: automated matches



Family Members
 
Domain: d4gnra_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 637987]
Domain: d3hs3b_ of protein: automated matches from Species: Lactobacillus acidophilus [TaxId: 1579]
Domain: d3huud_ of protein: automated matches from Species: Staphylococcus haemolyticus [TaxId: 279808]
Domain: d3brsb_ of protein: automated matches from Species: Clostridium phytofermentans [TaxId: 357809]
Domain: d3k9cb_ of protein: automated matches from Species: Rhodococcus jostii [TaxId: 101510]
Domain: d4irxb_ of protein: automated matches from Species: Caulobacter crescentus [TaxId: 190650]
Domain: d3gybb_ of protein: automated matches from Species: Corynebacterium glutamicum [TaxId: 1718]
Domain: d3dbic_ of protein: automated matches from Species: Escherichia coli K-12 [TaxId: 83333]
Domain: d2h0aa_ of protein: automated matches from Species: Thermus thermophilus [TaxId: 274]
Domain: d3nndd_ of protein: automated matches from Species: Rhodopseudomonas palustris [TaxId: 1076]
Domain: d3g85a_ of protein: automated matches from Species: Clostridium acetobutylicum [TaxId: 272562]
Domain: d4n0qd_ of protein: automated matches from Species: Brucella melitensis [TaxId: 224914]
Domain: d3e3md_ of protein: automated matches from Species: Silicibacter pomeroyi [TaxId: 89184]
Domain: d4o5aa_ of protein: automated matches from Species: Bifidobacterium animalis [TaxId: 555970]
Domain: d3egcf_ of protein: automated matches from Species: Burkholderia thailandensis [TaxId: 271848]
Domain: d3c6qd_ of protein: automated matches from Species: Thermotoga maritima [TaxId: 243274]
Domain: d3td9a_ of protein: automated matches from Species: Thermotoga maritima [TaxId: 2336]
Domain: d4kmrb_ of protein: automated matches from Species: Sanguibacter keddieii [TaxId: 446469]
Domain: d3h5ob_ of protein: automated matches from Species: Chromobacterium violaceum [TaxId: 536]
Domain: d3huta_ of protein: automated matches from Species: Rhodospirillum rubrum [TaxId: 269796]
Domain: d3jy6d_ of protein: automated matches from Species: Lactobacillus brevis [TaxId: 387344]
Domain: d2fn9b_ of protein: automated matches from Species: Thermotoga maritima [TaxId: 243274]
Domain: d3sm9a_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3kked_ of protein: automated matches from Species: Mycobacterium smegmatis [TaxId: 246196]
Domain: d3mizb_ of protein: automated matches from Species: Rhizobium etli [TaxId: 347834]
Domain: d2qu7b_ of protein: automated matches from Species: Staphylococcus saprophyticus [TaxId: 342451]
Domain: d3l6ub_ of protein: automated matches from Species: Exiguobacterium sibiricum [TaxId: 262543]
Domain: d3rotb_ of protein: automated matches from Species: Legionella pneumophila [TaxId: 272624]
Domain: d2rgya_ of protein: automated matches from Species: Burkholderia phymatum [TaxId: 391038]
Domain: d4kzka_ of protein: automated matches from Species: Burkholderia thailandensis [TaxId: 271848]
Domain: d3l49d_ of protein: automated matches from Species: Rhodobacter sphaeroides [TaxId: 272943]
Domain: d3mq4a_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3d8ub_ of protein: automated matches from Species: Vibrio parahaemolyticus [TaxId: 670]
Domain: d2iksb_ of protein: automated matches from Species: Escherichia coli K-12 [TaxId: 83333]
Domain: d3cs3a_ of protein: automated matches from Species: Enterococcus faecalis [TaxId: 226185]
Domain: d3c3kb_ of protein: automated matches from Species: Actinobacillus succinogenes [TaxId: 339671]
Domain: d3ctpb_ of protein: automated matches from Species: Alkaliphilus metalliredigens [TaxId: 293826]
Domain: d4joqb_ of protein: automated matches from Species: Rhodobacter sphaeroides [TaxId: 349102]
Domain: d3d02a_ of protein: automated matches from Species: Klebsiella pneumoniae [TaxId: 272620]
Domain: d3k4hb_ of protein: automated matches from Species: Bacillus cytotoxicus [TaxId: 315749]
Domain: d3ksmb_ of protein: automated matches from Species: Hahella chejuensis [TaxId: 349521]
Domain: d3jvdb_ of protein: automated matches from Species: Corynebacterium glutamicum [TaxId: 1718]
Domain: d3hcwb_ of protein: automated matches from Species: Staphylococcus aureus [TaxId: 158878]
Domain: d3e61b_ of protein: automated matches from Species: Staphylococcus saprophyticus [TaxId: 342451]
Domain: d3bilb_ of protein: automated matches from Species: Corynebacterium glutamicum [TaxId: 196627]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)