c.94.1.0


SCOP classification
 
Class: Alpha and beta proteins (a/b)
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: automated matches



Family Members
 
Domain: d3delf_ of protein: automated matches from Species: Chlamydia trachomatis [TaxId: 813]
Domain: d3ho7b_ of protein: automated matches from Species: Porphyromonas gingivalis [TaxId: 837]
Domain: d4oenb_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 637987]
Domain: d4i62a_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 637987]
Domain: d4hw8b_ of protein: automated matches from Species: Staphylococcus aureus [TaxId: 93061]
Domain: d4g4pa_ of protein: automated matches from Species: Enterococcus faecalis [TaxId: 226185]
Domain: d3k02a_ of protein: automated matches from Species: Streptomyces glaucescens [TaxId: 1907]
Domain: d4gvob_ of protein: automated matches from Species: Listeria monocytogenes [TaxId: 169963]
Domain: d4kd5d_ of protein: automated matches from Species: Clostridium difficile [TaxId: 272563]
Domain: d3ttnb_ of protein: automated matches from Species: Pseudomonas aeruginosa [TaxId: 287]
Domain: d2q2cd_ of protein: automated matches from Species: Geobacillus stearothermophilus [TaxId: 1422]
Domain: d4nn3a_ of protein: automated matches from Species: Desulfovibrio salexigens [TaxId: 526222]
Domain: d4lata_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 170187]
Domain: d3hv1b1 of protein: automated matches from Species: Streptococcus thermophilus [TaxId: 264199]
Domain: d4ovja_ of protein: automated matches from Species: Alicyclobacillus acidocaldarius [TaxId: 521098]
Domain: d2v25b_ of protein: automated matches from Species: Campylobacter jejuni [TaxId: 197]
Domain: d4gl0a_ of protein: automated matches from Species: Listeria monocytogenes [TaxId: 169963]
Domain: d3kzgd_ of protein: automated matches from Species: Legionella pneumophila [TaxId: 272624]
Domain: d4htga1 of protein: automated matches from Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Domain: d4exld_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 637987]
Domain: d4oteb_ of protein: automated matches from Species: Clostridium difficile [TaxId: 272563]
Domain: d3o9pa_ of protein: automated matches from Species: Escherichia coli [TaxId: 562]
Domain: d2yjpc_ of protein: automated matches from Species: Neisseria gonorrhoeae [TaxId: 242231]
Domain: d2vp1b_ of protein: automated matches from Species: Synechocystis sp. [TaxId: 1148]
Domain: d3cg3a_ of protein: automated matches from Species: Pyrococcus horikoshii [TaxId: 53953]
Domain: d4kcdb_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d3i6va_ of protein: automated matches from Species: Silicibacter pomeroyi [TaxId: 89184]
Domain: d4f3sa_ of protein: automated matches from Species: Salmonella enterica [TaxId: 90371]
Domain: d4ecfa_ of protein: automated matches from Species: Lactobacillus brevis [TaxId: 387344]
Domain: d4la9b_ of protein: automated matches from Species: Lactococcus lactis [TaxId: 272623]
Domain: d4n6ka_ of protein: automated matches from Species: Desulfovibrio salexigens [TaxId: 526222]
Domain: d2d3ia2 of protein: automated matches from Species: Chicken (Gallus gallus) [TaxId: 9031]
Domain: d2d3ia1 of protein: automated matches from Species: Chicken (Gallus gallus) [TaxId: 9031]
Domain: d4h0wa2 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4h0wa1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2zyoa_ of protein: automated matches from Species: Thermoactinomyces vulgaris [TaxId: 2026]
Domain: d2v84a_ of protein: automated matches from Species: Treponema pallidum [TaxId: 243276]
Domain: d4nf8b_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d4mlva1 of protein: automated matches from Species: Bacillus megaterium [TaxId: 1404]
Domain: d4e0xb_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d3qaxb_ of protein: automated matches from Species: Chlamydophila pneumoniae [TaxId: 83558]
Domain: d2y7ib_ of protein: automated matches from Species: Salmonella typhimurium [TaxId: 90371]
Domain: d4elrb_ of protein: automated matches from Species: Thermus thermophilus HB8 [TaxId: 300852]
Domain: d2ieeb_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 1423]
Domain: d3f11a_ of protein: automated matches from Species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Domain: d3gyyd_ of protein: automated matches from Species: Halomonas elongata [TaxId: 2746]
Domain: d4ovsb_ of protein: automated matches from Species: Sulfurospirillum deleyianum [TaxId: 525898]
Domain: d4n13a_ of protein: automated matches from Species: Borrelia burgdorferi [TaxId: 224326]
Domain: d2xd3a_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 170187]
Domain: d2ghbc_ of protein: automated matches from Species: Thermotoga maritima [TaxId: 243274]
Domain: d4k3fa_ of protein: automated matches from Species: Pseudomonas aeruginosa [TaxId: 208964]
Domain: d4ddda_ of protein: automated matches from Species: Ehrlichia chaffeensis [TaxId: 205920]
Domain: d4ef2b_ of protein: automated matches from Species: Enterococcus faecalis [TaxId: 226185]
Domain: d3vvfb_ of protein: automated matches from Species: Thermus thermophilus [TaxId: 262724]
Domain: d4ib2b_ of protein: automated matches from Species: Ruminococcus gnavus [TaxId: 411470]
Domain: d4edpb_ of protein: automated matches from Species: Clostridium perfringens [TaxId: 195103]
Domain: d4f3pb1 of protein: automated matches from Species: Burkholderia pseudomallei [TaxId: 320372]
Domain: d3tqwb_ of protein: automated matches from Species: Coxiella burnetii [TaxId: 777]
Domain: d4eqbb_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 525381]
Domain: d2fnca_ of protein: automated matches from Species: Thermotoga maritima [TaxId: 243274]
Domain: d3tqla_ of protein: automated matches from Species: Coxiella burnetii [TaxId: 777]
Domain: d4kysb_ of protein: automated matches from Species: Clostridium botulinum [TaxId: 441770]
Domain: d2vd3b1 of protein: automated matches from Species: Methanobacterium thermoautotrophicum [TaxId: 187420]
Domain: d3pprb_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 535025]
Domain: d2o1mb_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 1423]
Domain: d3r6ua_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 535025]
Domain: d3k4uf_ of protein: automated matches from Species: Wolinella succinogenes [TaxId: 844]
Domain: d3m8ua_ of protein: automated matches from Species: Haemophilus parasuis [TaxId: 557723]
Domain: d2gh9a_ of protein: automated matches from Species: Thermus thermophilus [TaxId: 262724]
Domain: d4gota_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 224308]
Domain: d4jwya_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d3o66b_ of protein: automated matches from Species: Staphylococcus aureus [TaxId: 158878]
Domain: d4io7b_ of protein: automated matches from Species: Adineta vaga [TaxId: 104782]
Domain: d3h7ma_ of protein: automated matches from Species: Geobacter sulfurreducens [TaxId: 35554]
Domain: d4ntla_ of protein: automated matches from Species: Enterococcus faecalis [TaxId: 226185]
Domain: d3up9a_ of protein: automated matches from Species: Actinomyces odontolyticus [TaxId: 411466]
Domain: d2pyyc_ of protein: automated matches from Species: Nostoc punctiforme [TaxId: 63737]
Domain: d4eq9a_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 637987]
Domain: d3oxnd_ of protein: automated matches from Species: Vibrio parahaemolyticus [TaxId: 670]
Domain: d4c0rb_ of protein: automated matches from Species: Streptococcus mutans [TaxId: 1309]
Domain: d3zsfh_ of protein: automated matches from Species: Neisseria gonorrhoeae [TaxId: 485]
Domain: d4h5gb_ of protein: automated matches from Species: Streptococcus pneumoniae [TaxId: 637987]
Domain: d2v3ua_ of protein: automated matches from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d3ir1f_ of protein: automated matches from Species: Neisseria meningitidis [TaxId: 487]
Domain: d2vd2a_ of protein: automated matches from Species: Bacillus subtilis [TaxId: 1423]
Domain: d2q89a_ of protein: automated matches from Species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)