d.3.1.1


SCOP classification
 
Class: Alpha and beta proteins (a+b)
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Papain-like



Family Members
 
Domain: d1yala_ of protein: Chymopapain from Species: Papaya (Carica papaya) [TaxId: 3649]
Domain: d9papa_ of protein: Papain from Species: Papaya (Carica papaya) [TaxId: 3649]
Domain: d1ef7b_ of protein: (Pro)cathepsin X from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3bcnb_ of protein: automated matches from Species: Tabernaemontana divaricata [TaxId: 52861]
Domain: d4klbe_ of protein: Cruzain from Species: Trypanosoma cruzi [TaxId: 5693]
Domain: d3f5vb_ of protein: Major mite fecal allergen der p 1 from Species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]
Domain: d2acta_ of protein: Actinidin from Species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]
Domain: d2pnsb_ of protein: automated matches from Species: Tabernaemontana divaricata [TaxId: 52861]
Domain: d2dcda_ of protein: automated matches from Species: Cow (Bos taurus) [TaxId: 9913]
Domain: d3bwkd_ of protein: automated matches from Species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Domain: d1m6db_ of protein: Cathepsin F from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3kfqb_ of protein: (Pro)cathepsin V from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1gece_ of protein: Glycyl endopeptidase from Species: Papaya (Carica papaya) [TaxId: 3649]
Domain: d1y4hb_ of protein: Staphopain SspB from Species: Staphylococcus aureus [TaxId: 1280]
Domain: d2p86a_ of protein: automated matches from Species: Trypanosoma brucei [TaxId: 31286]
Domain: d3ioqa_ of protein: automated matches from Species: Carica candamarcensis [TaxId: 35926]
Domain: d1cqdd_ of protein: Proline-specific cysteine protease from Species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]
Domain: d3pnra_ of protein: Falcipain 2 from Species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Domain: d1ppoa_ of protein: Caricain (protease omega) from Species: Papaya (Carica papaya) [TaxId: 3649]
Domain: d2preb_ of protein: automated matches from Species: Tabernaemontana divaricata [TaxId: 52861]
Domain: d1cv8a_ of protein: Staphopain StpA from Species: Staphylococcus aureus [TaxId: 1280]
Domain: d1theb_ of protein: (Pro)cathepsin B from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]
Domain: d1iwda_ of protein: Ervatamin B from Species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]
Domain: d2oula_ of protein: Falcipain 2 from Species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Domain: d3pbha_ of protein: (Pro)cathepsin B from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1s4vb_ of protein: Vignain (bean endopeptidase) from Species: Castor bean (Ricinus communis) [TaxId: 3988]
Domain: d2ftdb_ of protein: (Pro)cathepsin K from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2bdzd_ of protein: automated matches from Species: Jacaratia mexicana [TaxId: 309130]
Domain: d3p5xa_ of protein: automated matches from Species: Actinidia arguta [TaxId: 64478]
Domain: d1jqpa2 of protein: Cathepsin C (dipeptidyl peptidase I), catalytic domain from Species: Norway rat (Rattus norvegicus) [TaxId: 10116]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)