d.58.7.1


SCOP classification
 
Class: Alpha and beta proteins (a+b)
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD



Family Members
 
Domain: d2cpia1 of protein: E3 ubiquitin protein ligase CNOT4 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3ulha_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2dh7a_ of protein: Nucleolysin TIAR from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3zzzb_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1weya_ of protein: Calcipressin-1 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2cqha1 of protein: IGF-II mRNA-binding protein 2 isoform A from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2cpha1 of protein: Probable RNA-binding protein 19, Rbm19 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2k3ka1 of protein: Splicesomal U1A protein from Species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Domain: d3v4mb_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2krra1 of protein: Nucleolin from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2krra2 of protein: Nucleolin from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2vopa2 of protein: Lupus LA protein from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3feyb_ of protein: CBP20, 20KDa nuclear cap-binding protein from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1no8a_ of protein: Nuclear factor Aly from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1x5ua1 of protein: Splicing factor 3B subunit 4 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1rkja2 of protein: Nucleolin from Species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Domain: d1rkja1 of protein: Nucleolin from Species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Domain: d1wf1a_ of protein: RNA-binding protein Raly (Autoantigen p542) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1fnxh2 of protein: Hu antigen C (Huc) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2cq0a1 of protein: Eukaryotic translation initiation factor 3 subunit 4 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2cq3a1 of protein: RNA-binding protein 9 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2ek6d_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4lirb_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wg1a_ of protein: Probable RNA-binding protein KIAA1579 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2cpxa1 of protein: RNA-binding protein 41, RBM41 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1g2ea2 of protein: Hu antigen D (Hud) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1g2ea1 of protein: Hu antigen D (Hud) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1x4ha1 of protein: RNA-binding protein 28 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2dnza_ of protein: RNA binding protein 23 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wg4a_ of protein: Splicing factor, arginine/serine-rich 9 (SFRS9) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2cqda1 of protein: RNA-binding region containing protein 1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2dita1 of protein: HIV Tat-specific factor 1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2up1a2 of protein: Nuclear ribonucleoprotein A1 (RNP A1, UP1) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2disa1 of protein: Hypothetical protein FLJ20273 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4iufa_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1x4ba1 of protein: Heterogeneous nuclear ribonucleoproteins A2/B1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wwhd_ of protein: Nucleoporin 35 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1whya_ of protein: Putative RNA-binding protein 15B, Rbm15b from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2cpda1 of protein: APOBEC1 stimulating protein from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1ufwa_ of protein: Synaptojanin 2 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1a9nd_ of protein: Splicing factor U2B'' from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1wg5a_ of protein: Heterogeneous nuclear ribonucleoprotein H' from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1u6fa1 of protein: RNA-binding protein UBP1 from Species: Trypanosoma cruzi [TaxId: 5693]
Domain: d4cq1h1 of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2up1a1 of protein: Nuclear ribonucleoprotein A1 (RNP A1, UP1) from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3lqvb_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1fnxh1 of protein: Hu antigen C (Huc) from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d3s7rb_ of protein: automated matches from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2cpea1 of protein: RNA-binding protein EWS from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1x4fa1 of protein: Matrin 3 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1x5oa1 of protein: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2erra1 of protein: Ataxin-2-binding protein 1 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2rs8a_ of protein: Non-POU domain-containing octamer-binding protein, NonO from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d2cqpa1 of protein: RNA-binding protein 12 from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1x5sa1 of protein: Cold-inducible RNA-binding protein from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d1x4ea1 of protein: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d4fxwc_ of protein: Splicing factor U2AF 65 KDa subunit from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d2jx2a_ of protein: Negative elongation factor E, NELF-E from Species: Human (Homo sapiens) [TaxId: 9606]
Domain: d3d2wa_ of protein: automated matches from Species: Mouse (Mus musculus) [TaxId: 10090]
Domain: d1x4ca1 of protein: Splicing factor, arginine/serine-rich 1, SFRS1 from Species: Mouse (Mus musculus) [TaxId: 10090]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)