e.8.1.4


SCOP classification
 
Class: Multi-domain proteins (alpha and beta)
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase



Family Members
 
Domain: d4k50m_ of protein: Viral RNA polymerase from Species: Human rhinovirus 16 [TaxId: 31708]
Domain: d1n38a_ of protein: Reovirus polymerase lambda3 from Species: Reovirus [TaxId: 10891]
Domain: d3hvob_ of protein: automated matches from Species: Hepatitis c virus isolate hc-j8 [TaxId: 11115]
Domain: d3n6na_ of protein: automated matches from Species: Human enterovirus 71 [TaxId: 39054]
Domain: d4khrb_ of protein: Viral RNA polymerase from Species: Hepatitis c virus subtype 1a [TaxId: 31646]
Domain: d4mz4b_ of protein: Viral RNA polymerase from Species: Hepatitis c virus isolate [TaxId: 420174]
Domain: d4ikaa_ of protein: automated matches from Species: Human enterovirus 71 [TaxId: 39054]
Domain: d2im3a_ of protein: Viral RNA polymerase from Species: Human poliovirus 1 [TaxId: 12081]
Domain: d2f8ex_ of protein: Viral RNA polymerase from Species: Foot-and-mouth disease virus - type c [TaxId: 12116]
Domain: d3phed_ of protein: automated matches from Species: Hepatitis C virus [TaxId: 11103]
Domain: d1khwb_ of protein: Viral RNA polymerase from Species: Rabbit hemorrhagic disease virus [TaxId: 11976]
Domain: d3h5ya_ of protein: Viral RNA polymerase from Species: Norwalk virus [TaxId: 11983]
Domain: d3olbm_ of protein: Viral RNA polymerase from Species: Poliovirus type 1, strain Mahoney [TaxId: 12080]
Domain: d4k4zm_ of protein: automated matches from Species: Human coxsackievirus B3 [TaxId: 12072]
Domain: d1xr6a_ of protein: Viral RNA polymerase from Species: Human rhinovirus 1B, HRV-1B [TaxId: 12129]
Domain: d1z4ua_ of protein: automated matches from Species: Hepatitis C virus [TaxId: 11103]



Multiple structure based alignment (Multiprot)


Multiple Structure based Sequence alignment
Multiple Structure based Sequence alignment (HHAlign)
Integrated Structure-Sequence alignment (ClustalO)
Integrated Structure-Sequence alignment (HMMalign)


Phylogenetic Representation
Strucuture based Phylogenetic tree (Using SDM) Strucuture based Phylogenetic tree (Using TM)